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Paper ID: 1395

eFamily: Bridging Sequence and Structure
Rolf,Apweiler Alex,Bateman Ujjwal,Das Mark,Dibley Rob,Finn Kim,Henrick David,Howorth Tim,Hubbard Phil,McNeil Alexey,Murzin Christine,Orengo Andreas,Prlic Ian,Sillitoe Sameer,Velankar

Appeared in: Proceedings of the UK e-Science All Hands Conference 2004 website: http://www.allhands.org.uk/2004/
Page Numbers:1069 - 1073
Publisher: Engineering and Physical Sciences Research Council
Year: 2004
ISBN/ISSN: 1-904425-21-6
Contributing Organisation(s):
Field of Science: e-Science

URL: http://www.allhands.org.uk/2004/proceedings/papers/211.pdf

Abstract: The eFamily project is working at improving the navigation between the disparate resources of protein structure and protein sequence. Integral to this work has been the establishment of an amino acid residue by amino acid residue mapping between the two resources, which is held in the MSD database. Within the project, there are also four protein family databases, two based on protein structure (CATH and SCOP), two based on protein sequence (InterPro and Pfam). The mapping has allowed the information contained in all the databases to be exchanged and queried from a user’s point of view. In this paper, we describe how the information contained in the different databases is being exchanged using both the DAS (distributed annotation system) and Web services. Examples of a DAS client using these resources and a Web based tool using the Web services are presented. We also outline how these Web services can be combined with other services to form biological analysis pipelines.

Keywords: e-Science, AHM 2004


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