Workshop on Database Issues in Biological Databases (DBiBD)08 January, 05 09:30 AM - 09 January, 05 05:00 PMe-Science Institute, 15 South College Street, , Edinburgh |
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Any slides or other material generated as a result of this event can be found at: www.nesc.ac.uk/action/esi/contribution.cfm?Title=459
Please register for the Workshop on Database Issues in Biological Databases (DBiBD) and select the events you wish to attend. Further details and a conference programme can be found on the DBiBD website.
The National e-Science Centre, e-Science Institute in Edinburgh is a centre for education and research for e-Science, and provides new state-of-the art facilities including an Access Grid system.
| Saturday the 8th | |
| 9.00 | Opens |
| 9.30 | Exploring and Exploiting the Biological Maze, Zoe Lacroix |
| 10.00 | Towards a Taxonomically Intelligent Phylogentic Database, Rod Page |
| 10.30 | MMD-A Mathematically Modelling Database for Cell Signalling Pathways, V. Mahesh, M. Breit, G. Enzenberg, R. Modre-Osprian and B. Tilg. |
| 11.00 | Coffee |
| 11.30 | Creating a Medicinal Plant Database, Carsten Kettner, Harold Kosch, Margit Lang, Janine Lachner, Doris Oborny and Erich Teppan. |
| 12.00 | Taxonomy Database as an Enabling Techology for the Tree of Life, Nadia Anwar. |
| 12.30 | Lunch |
| 2.00 | Using the Functional Data Model to Store and Query Recursive Biological Data, Graham Kemp, Selpi and Merja Karjalainen. |
| 2.30 | The Ensembl Database - A relational database for genome information, Stabenau, A., Andrews, T.D., Bevan, P., Caccamo, M., Chen, Y., Clarke L., Coates, G., Curwen, V., Cutts, T., Down, T., Fernandez-Suarez, X.M., Gane, P., Gilbert, J., Hammond, M., Hotz, H., Iyer, V., Jekosch, K., Kahari, A., Kasprzyk, A., Keefe, D., Lehvaslaiho, H., McVicker, G., Melsopp, C., Meidl, P., Pettet, R., Potter, S., Proctor, G., Rae, M., Rios, D., Searle, S., Slater, G., Smedley, D., Smith, J., Spooner, W., Stalker, J., Storey, R., Ureta-Vidal, A., Woodwark, K.C., Cameron, G., Durbin, R., Cox, A., Hubbard, T. |
| 3.00 | Integration of functional genomics data using sets of biological entities, Roland Barriot, Jerome Poix, Claire Gaugain, Isabelle Dutour and Antoine de Daruvar. |
| 3.30 | Coffee |
| 4.00 | NCRI Cancer Informatics Initiative: maximising the impact of cancer research using informatics , Peter Kerr, Fiona Reddington, Helen Parkinson, Max Wilkinson, Richard Begent |
| 4.30 | BioMart Query Network, Arek Kasprzyk, Andreas Kahari, Darin London, Craig Melsopp, Damian Smedley, Will Spooner, Arne Stabenau, Katerina Tzouvara. |
| Sunday the 9th | |
| 9.00 | Wormbase, Anthony Rogers and Daniel Lawson. |
| 9.30 | Database Issues in Nutritional Genomics, Peter M.D. Gray and Anthony J. Travis. |
| 10.00 | Enhancing the Semantics of Links and Paths in Life Science Sources , S. Heymann, F. Naumann, P. Rieger and L. Raschid. |
| 10.30 | Coffee |
| 11.00 | Well Constructed Workflows in Bioinformatics, Anna Gambin, Jan Hidders, Natalia Kwasnikowska, Slawomir Lasota, Jacek Sroka, Jerzy Tyskiewicz and Jan Van den Bussche. |
| 11.30 | A Classification of Biological Data Artifacts, Judice L.Y. Koh, Mong Li Lee, Vladimir Brusic. |
| 12.00 | The ArrayExpress Gene Expression Database: a Software Engineering and Implementation Perspective, Ugis Sarkans, Helen Parkinson, Gonzalo Garcia Lara, Ahmet Oezcimen, Anjan Sharma, Niran Abeygunawardena, Sergio Contrino, Ele Holloway, Philippe Rocca-Serra, Gaurab Mukherjee, Mohammadreza Shojatalab, Misha Kapushesky, Susanna Sansone, Anna Farne, Tim Rayner, and Alvis Brazma. |
| 12.30 | Lunch |
| 2.00 | Using DataBase ontologies and Related Concepts in SRS 8.1 to find biological data, Jaquie Finn. |
| 2.30 | Statistical Data Fusion to prioritize lists of genes, Bert Coessens, Stein Aerts, Bart de Moor. |
| 3.00 | Integration of the Biological Databases into Grid-Portal Environments, Michal Kosiedowski, Michal Malecki, Cezary Mazurek, Pawel Spychala and Marcin Wolski. |
| 3.30 | Coffee |
| 4.00 | MitoNuc and MitoDrome: two databases of nuclear genes encoding for mitochondrial proteins, F. Licciulli, D. Catalano, A. Turi, G. Grillo, G. Tripoli, D. Porcelli, C. Caggese, C. Saccone and D. D'Elia. |
| 4.30 | Proteomics Databases for comparative studies: Transactional and Data Warehouse approaches to solve the needle in a haystack problem, Patricia Rodriguez-Tome, Nicolas Pinaud and Thomas Kowall. |
Registration for this event is now closed. To enquire about an application or to cancel a previous application please contact NeSC Administration.
Enquiries should be made directly to our Conference Administrator.
Travel: The e-Science Institute is less than 15 minutes walk from Waverley rail station, and from St Andrews square bus stations. It is approximately 20 minutes by taxi from Edinburgh airport (40 minutes by bus). Please see our web site for a map of the area.